6GC3 | pdb_00006gc3

Structure of Nrd1 CID - Sen1 NIM complex

PDB DOI: https://doi.org/10.2210/pdb6GC3/pdb
BMRB: 34260

Classification: TRANSCRIPTION
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-04-17 Released: 2020-02-05
Deposition Author(s): Jasnovidova, O., Kubicek, K., Stefl, R.
Funding Organization(s): Czech Science Foundation, European Research Council (ERC)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 6GC3

This is version 1.1 of the entry. See complete history.

Literature

Structure of Nrd1 CID - Sen1 NIM complex

Jasnovidova, O., Kubicek, K., Stefl, R.

To be published.

Macromolecule Content

Total Structure Weight: 19.69 kDa
Atom Count: 1,360
Modeled Residue Count: 171
Deposited Residue Count: 173
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein NRD1	A	161	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: NRD1, YNL251C, N0868
UniProt
Find proteins for P53617 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53617 Go to UniProtKB: P53617
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53617
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Helicase SEN1	B	12	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 3.6.4 (PDB Primary Data), 3.6.4.13 (UniProt), 3.6.4.12 (UniProt)
UniProt
Find proteins for Q00416 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q00416 Go to UniProtKB: Q00416
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q00416
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-02-05

Deposition Author(s):

Jasnovidova, O.

Funding Organization	Location	Grant Number
Czech Science Foundation	Czech Republic	13-18344S
Czech Science Foundation	Czech Republic	15-24117S
European Research Council (ERC)		649030

Revision History (Full details and data files)

Version 1.0: 2020-02-05
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.