Download MendeleyCrystal Structures of the Single PDZ Domains from GRASP65 and their Interaction with the Golgin GM130
Jurk, C.M., Roske, Y., Heinemann, U.(2018) Croat Chem Acta
6G8T
Crystal Structures of the Single PDZ Domains from GRASP65 and their Interaction with the Golgin GM130
- PDB DOI: https://doi.org/10.2210/pdb6G8T/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-04-10 Released: 2019-04-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.67 Å
- R-Value Free: 0.258
- R-Value Work: 0.209
- R-Value Observed: 0.211
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Golgi reassembly-stacking protein 1 | 118 | Homo sapiens | Mutation(s): 0 Gene Names: GORASP1, GOLPH5, GRASP65 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BQQ3 (Homo sapiens) Explore Q9BQQ3 Go to UniProtKB: Q9BQQ3 | |||||
PHAROS: Q9BQQ3 GTEx: ENSG00000114745 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9BQQ3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.67 Å
- R-Value Free: 0.258
- R-Value Work: 0.209
- R-Value Observed: 0.211
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.377 | α = 90 |
| b = 63.163 | β = 90 |
| c = 80.805 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2019-04-24 Deposition Author(s): Jurk, C.M., Roske, Y., Heinemann, U.
Revision History (Full details and data files)
- Version 1.0: 2019-04-24
Type: Initial release - Version 1.1: 2020-05-06
Changes: Database references - Version 1.2: 2024-01-17
Changes: Data collection, Database references, Refinement description
