The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with CU(I) ions.
Polyakov, K.M., Tsallagov, S.I., Tikhkonova, T.V., Popov, V.O.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
thiocyanate dehydrogenase | 467 | Thioalkalivibrio paradoxus ARh 1 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for W0DP94 (Thioalkalivibrio paradoxus ARh 1) Explore W0DP94  Go to UniProtKB:  W0DP94 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | W0DP94 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CU Query on CU | AA [auth D] BA [auth D] CA [auth D] DA [auth D] E [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A, B, C, D | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 90.64 | α = 90 |
b = 162.37 | β = 119.64 |
c = 90.71 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Russian Science Foundation | Russian Federation | Grant 14-24-00172 |