6FXD

Crystal structure of MupZ from Pseudomonas fluorescens

• PDB DOI: https://doi.org/10.2210/pdb6FXD/pdb

• Classification: BIOSYNTHETIC PROTEIN
• Organism(s): Pseudomonas fluorescens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-03-08 Released: 2019-03-06 
• Deposition Author(s): Wang, L., Parnell, A., Williams, C., Bakar, N.A., van der Kamp, M.W., Simpson, T.J., Race, P.R., Crump, M.P., Willis, C.L.
• Funding Organization(s): Biotechnology and Biological Sciences Research Council

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.195 
• R-Value Work: 0.161 
• R-Value Observed: 0.162 

Starting Model: experimental

Literature

A Rieske oxygenase/epoxide hydrolase-catalysed reaction cascade creates oxygen heterocycles in mupirocin biosynthesis

Wang, L., Parnell, A., Williams, C., Bakar, N.A., van der Kamp, M.W., Simpson, T.J., Race, P.R., Crump, M.P., Willis, C.L.

(2018) Nat Catal 

• DOI: https://doi.org/10.1038/s41929-018-0183-5

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration, homology

Macromolecule Content

• Total Structure Weight: 32.36 kDa 
• Atom Count: 2,143 
• Modelled Residue Count: 249 
• Deposited Residue Count: 282 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MupZ	A, B	141	Pseudomonas fluorescens	Mutation(s): 0  Gene Names: mupZ
UniProt
Find proteins for H7CRF0 (Pseudomonas fluorescens) Explore H7CRF0  Go to UniProtKB:  H7CRF0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.195 
• R-Value Work: 0.161 
• R-Value Observed: 0.162 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.33	α = 90
b = 80.09	β = 101.26
c = 78.82	γ = 90

Software Package:

Software Name	Purpose
GDA	data collection
PDB_EXTRACT	data extraction
PHENIX	model building
PHENIX	refinement
MOLREP	phasing
PHASER	phasing
DIALS	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-03-06 
Deposition Author(s): Wang, L., Parnell, A., Williams, C., Bakar, N.A., van der Kamp, M.W., Simpson, T.J., Race, P.R., Crump, M.P., Willis, C.L.

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Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council	United Kingdom	BB/L01386X/1

Revision History  

• Version 1.0: 2019-03-06
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description