6FPD

AB21 protein from Agaricus bisporus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.247 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure and properties of AB21, a novel Agaricus bisporus protein with structural relation to bacterial pore-forming toxins.

Komarek, J.Ivanov Kavkova, E.Houser, J.Horackova, A.Zdanska, J.Demo, G.Wimmerova, M.

(2018) Proteins 86: 897-911

  • DOI: https://doi.org/10.1002/prot.25522
  • Primary Citation of Related Structures:  
    6FPD

  • PubMed Abstract: 

    We report the characterization of the dimeric protein AB21 from Agaricus bisporus, one of the most commonly and widely consumed mushrooms in the world. The protein shares no significant sequence similarity with any protein of known function, and it is the first characterized member of its protein family. The coding sequence of the ab21 gene was determined and the protein was expressed in E. coli in a recombinant form. We demonstrated a high thermal and pH stability of AB21 and proved the weak affinity of the protein to divalent ions of some transition metals (nickel, zinc, cadmium, and cobalt). The reported crystallographic structure exhibits an interesting rod-like helical bundle fold with structural similarity to bacterial toxins of the ClyA superfamily. By immunostaining, we demonstrated an abundance of AB21 in the fruiting bodies of A. bisporus.


  • Organizational Affiliation

    Central European Institute of Technology, Masaryk University, Kamenice 5, Brno, 62500, Czech Republic.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein AB21208Agaricus bisporusMutation(s): 0 
UniProt
Find proteins for A0A384E160 (Agaricus bisporus)
Explore A0A384E160 
Go to UniProtKB:  A0A384E160
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A384E160
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.247 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.936α = 90
b = 73.936β = 90
c = 70.592γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-16
    Type: Initial release
  • Version 1.1: 2018-05-30
    Changes: Data collection, Database references
  • Version 1.2: 2018-10-24
    Changes: Data collection, Database references
  • Version 1.3: 2024-05-08
    Changes: Data collection, Database references