6FDG

Novel crystal structure of DHNA-CoA Thioesterase from Staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb6FDG/pdb
• Entry: 6FDG supersedes: 5LQL

• Classification: HYDROLASE
• Organism(s): Staphylococcus aureus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-12-22 Released: 2018-02-21 
• Deposition Author(s): Murad, A.M., Betzel, C., Wrenger, C.
• Funding Organization(s): FAPESP, CAPES

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.198 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 

Literature

Novel crystal structure of DHNA-CoA Thioesterase from Staphylococcus aureus

Murad, A.M., Perbandt, M., Lindner, J., Schubert, R., Mundogo, C., Brognaro, H., Falke, S., Wrenger, C., Betzel, C.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology, gel filtration, light scattering, SAXS

Macromolecule Content

• Total Structure Weight: 72.72 kDa 
• Atom Count: 5,483 
• Modelled Residue Count: 608 
• Deposited Residue Count: 620 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxybenzoyl-CoA thioesterase	A, B, C, D	155	Staphylococcus aureus	Mutation(s): 0  Gene Names: AB520_06685, ERS072840_02738
UniProt
Find proteins for A0A166E508 (Staphylococcus aureus) Explore A0A166E508  Go to UniProtKB:  A0A166E508

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.198 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.607	α = 90
b = 90.783	β = 92
c = 75.378	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
Auto-Rickshaw	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-02-21 
Deposition Author(s): Murad, A.M., Betzel, C., Wrenger, C.
• This entry supersedes: 5LQL

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Funding Organization	Location	Grant Number
FAPESP	Brazil	2013/10288-1
FAPESP	Brazil	2012/12790-3
CAPES	Brazil	BEX 7454139

Revision History  

• Version 1.0: 2018-02-21
  Type: Initial release
  
• Version 1.1: 2018-03-14
  Changes: Source and taxonomy
• Version 1.2: 2024-05-08
  Changes: Data collection, Database references