6FBJ | pdb_00006fbj

monoclonal antibody targeting Matrix metalloproteinase 7

• PDB DOI: https://doi.org/10.2210/pdb6FBJ/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Mus musculus
• Expression System: Mus musculus
• Mutation(s): No 


• Deposited: 2017-12-19 Released: 2019-01-30 
• Deposition Author(s): Dym, O.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.249 (Depositor), 0.264 (DCC) 
• R-Value Work: 
  0.207 (Depositor), 0.221 (DCC) 
• R-Value Observed: 
  0.209 (Depositor) 

Starting Model: experimental

Literature

Novel monoclonal antibody targeting Matrix metalloproteinase 7 shows therapeutic potential against pancreatic cancer

Mohan, V., Gaffney, J., Klepfish, M., Akbareian, S., Grunwald, B., Akkari, L., Solomonov, I., Dym, O., Eisenstein, M., Joyce, J., Kruger, A., Edwards, D., Sagi, I.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: mass spectrometry

Macromolecule Content 

• Total Structure Weight: 47.73 kDa 
• Atom Count: 3,280 
• Modeled Residue Count: 427 
• Deposited Residue Count: 437 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy Chain	A [auth H]	223	Mus musculus	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain	B [auth L]	214	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.249 (Depositor), 0.264 (DCC) 
• R-Value Work:  0.207 (Depositor), 0.221 (DCC) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.443	α = 90
b = 88.443	β = 90
c = 119.341	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2019-01-30 
Deposition Author(s): Dym, O.

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Funding Organization	Location	Grant Number
	Israel	FP7-H2020

Revision History  

• Version 1.0: 2019-01-30
  Type: Initial release
  
• Version 1.1: 2019-11-13
  Changes: Data collection, Source and taxonomy
• Version 1.2: 2024-01-17
  Changes: Data collection, Database references, Refinement description
• Version 1.3: 2024-10-16
  Changes: Structure summary