6F5J | pdb_00006f5j

Structure of deformed wing virus carrying the GFP gene

  • Classification: VIRAL PROTEIN
  • Organism(s): Deformed wing virus
  • Mutation(s): No 

  • Deposited: 2017-12-01 Released: 2018-12-12 
  • Deposition Author(s): Skubnik, K., Plevka, P.
  • Funding Organization(s): European Research Council, European Molecular Biology Organization

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6F5J

This is version 1.2 of the entry. See complete history. 

Literature

In vivo infection dynamics of deformed wing virus (DWV) in honeybees

Skubnik, K., Plevka, P.

To be published.

Macromolecule Content 

  • Total Structure Weight: 103.74 kDa 
  • Atom Count: 7,001 
  • Modeled Residue Count: 894 
  • Deposited Residue Count: 927 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Genome polyprotein258Deformed wing virusMutation(s): 0 
UniProt
Find proteins for L0CTV4 (Deformed wing virus)
Explore L0CTV4 
Go to UniProtKB:  L0CTV4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL0CTV4
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Genome polyprotein253Deformed wing virusMutation(s): 0 
UniProt
Find proteins for E0YTW0 (Deformed wing virus)
Explore E0YTW0 
Go to UniProtKB:  E0YTW0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE0YTW0
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Genome polyprotein416Deformed wing virusMutation(s): 0 
UniProt
Find proteins for Q7TG18 (Deformed wing virus)
Explore Q7TG18 
Go to UniProtKB:  Q7TG18
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7TG18
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.1
MODEL REFINEMENTPHENIX

Structure Validation

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View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
European Research Council355855
European Molecular Biology Organization3041

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-12
    Type: Initial release
  • Version 1.1: 2019-07-31
    Changes: Data collection, Refinement description
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references, Derived calculations