6ENQ | pdb_00006enq

Structure of human PPAR gamma LBD in complex with Lanifibranor (IVA337)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.271 (Depositor), 0.230 (DCC) 
  • R-Value Work: 
    0.227 (Depositor), 0.228 (DCC) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history

Literature

Design, Synthesis, and Evaluation of a Novel Series of Indole Sulfonamide Peroxisome Proliferator Activated Receptor (PPAR) alpha / gamma / delta Triple Activators: Discovery of Lanifibranor, a New Antifibrotic Clinical Candidate.

Boubia, B.Poupardin, O.Barth, M.Binet, J.Peralba, P.Mounier, L.Jacquier, E.Gauthier, E.Lepais, V.Chatar, M.Ferry, S.Thourigny, A.Guillier, F.Llacer, J.Amaudrut, J.Dodey, P.Lacombe, O.Masson, P.Montalbetti, C.Wettstein, G.Luccarini, J.M.Legendre, C.Junien, J.L.Broqua, P.

(2018) J Med Chem 61: 2246-2265

  • DOI: https://doi.org/10.1021/acs.jmedchem.7b01285
  • Primary Citation Related Structures: 
    6ENQ

  • PubMed Abstract: 

    Here, we describe the identification and synthesis of novel indole sulfonamide derivatives that activate the three peroxisome proliferator activated receptor (PPAR) isoforms. Starting with a PPARα activator, compound 4, identified during a high throughput screening (HTS) of our proprietary screening library, a systematic optimization led to the discovery of lanifibranor (IVA337) 5, a moderately potent and well balanced pan PPAR agonist with an excellent safety profile. In vitro and in vivo, compound 5 demonstrated strong activity in models that are relevant to nonalcoholic steatohepatitis (NASH) pathophysiology suggesting therapeutic potential for NASH patients.


  • Organizational Affiliation
    • Inventiva , 50 rue de Dijon , 21121 Daix , France.

Macromolecule Content 

  • Total Structure Weight: 64.85 kDa 
  • Atom Count: 4,221 
  • Modeled Residue Count: 503 
  • Deposited Residue Count: 564 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Peroxisome proliferator-activated receptor gamma
A, B
282Homo sapiensMutation(s): 0 
Gene Names: PPARGNR1C3
UniProt & NIH Common Fund Data Resources
Find proteins for P37231 (Homo sapiens)
Explore P37231 
Go to UniProtKB:  P37231
PHAROS:  P37231
GTEx:  ENSG00000132170 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37231
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
BJB

Query on BJB



Download:Ideal Coordinates CCD File
C [auth A]4-[1-(1,3-benzothiazol-6-ylsulfonyl)-5-chloro-indol-2-yl]butanoic acid
C19 H15 Cl N2 O4 S2
OQDQIFQRNZIEEJ-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
BJB BindingDB:  6ENQ EC50: min: 202, max: 4111 (nM) from 14 assay(s)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.271 (Depositor), 0.230 (DCC) 
  • R-Value Work:  0.227 (Depositor), 0.228 (DCC) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.88α = 90
b = 60β = 102.93
c = 117.49γ = 90
Software Package:
Software NamePurpose
CNXrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 1.1: 2018-04-04
    Changes: Data collection, Database references, Derived calculations, Source and taxonomy
  • Version 1.2: 2024-01-17
    Changes: Data collection, Database references, Refinement description