6ENA | pdb_00006ena

Nemertide alpha-1

PDB DOI: https://doi.org/10.2210/pdb6ENA/pdb
BMRB: 34183

Classification: TOXIN
Organism(s): Lineus longissimus
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2017-10-04 Released: 2018-03-14
Deposition Author(s): Jacobsson, E., Rosengren, K.J., Goransson, U.
Funding Organization(s): Swedish Research Council, Australian Research Council

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 20
Selection Criteria: lowest MolProbity score

wwPDB Validation 3D Report Full Report

Validation slider image for 6ENA

This is version 1.2 of the entry. See complete history.

Literature

Lineus longissimus, the longest animal on earth, expresses peptide toxins targeting voltage gated sodium channels

Jacobsson, E., Andersson, H.S., Strand, M., Peigneur, S., Eriksson, C., Loden, H., Shariatgorji, M., Andren, P.E., Lebbe, K.M., Rosengren, K.J., Tytgat, J., Goransson, U.

(2018) Sci Rep

Macromolecule Content

Total Structure Weight: 3.32 kDa
Atom Count: 227
Modeled Residue Count: 31
Deposited Residue Count: 31
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nemertide alpha-1	A	31	Lineus longissimus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P0DM24 (Lineus longissimus) Explore P0DM24 Go to UniProtKB: P0DM24
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0DM24
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
HYP Query on HYP	A	L-PEPTIDE LINKING	C₅ H₉ N O₃		PRO

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 20
Selection Criteria: lowest MolProbity score

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2018-03-14

Deposition Author(s):

Rosengren, K.J.

Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	2014-3327
Australian Research Council	Australia	FT130100890

Revision History (Full details and data files)

Version 1.0: 2018-03-14
Type: Initial release
Version 1.1: 2019-05-08
Changes: Data collection
Version 1.2: 2023-06-14
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.