6E6N | pdb_00006e6n

Pheromone from Euplotes raikovi, Er-13

PDB DOI: https://doi.org/10.2210/pdb6E6N/pdb

Classification: SIGNALING PROTEIN
Organism(s): Euplotes raikovi
Mutation(s): No

Deposited: 2018-07-25 Released: 2019-08-07
Deposition Author(s): Finke, A.D., Marsh, M.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free:
0.180 (Depositor), 0.180 (DCC)
R-Value Work:
0.152 (Depositor), 0.154 (DCC)
R-Value Observed:
0.155 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6E6N

This is version 1.1 of the entry. See complete history.

Literature

Ab initio crystal structure determination of Euplotes raikovi pheromones from high-resolution data

Finke, A.D., Pedrini, B., Alimenti, C., Vallesi, A., Luporini, P., Marsh, M.

To be published.

Macromolecule Content

Total Structure Weight: 4.06 kDa
Atom Count: 312
Modeled Residue Count: 38
Deposited Residue Count: 38
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pheromone from Euplotes raikovi Er-13	A	38	Euplotes raikovi	Mutation(s): 0
UniProt
Find proteins for A0A482LMF4 (Euplotes raikovi) Explore A0A482LMF4 Go to UniProtKB: A0A482LMF4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A482LMF4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free: 0.180 (Depositor), 0.180 (DCC)
R-Value Work: 0.152 (Depositor), 0.154 (DCC)
R-Value Observed: 0.155 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.116	α = 90
b = 39.116	β = 90
c = 19.446	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
Arcimboldo	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-08-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-08-07
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.