6DXM | pdb_00006dxm

NMR structure for Sp1 transcription factor duplex 5'-d(TGGGCGGGG)

• PDB DOI: https://doi.org/10.2210/pdb6DXM/pdb
• BMRB: 30485
• NAKB: 6DXM

• Classification: DNA
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2018-06-29 Released: 2019-07-03 
• Deposition Author(s): Davis, E.V., Hennig, M., Arya, D.P.
• Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences

Davis, E.V., Hennig, M., Arya, D.P.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 5.47 kDa 
• Atom Count: 363 
• Modeled Residue Count: 18 
• Deposited Residue Count: 18 
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*G)-3')	A	9	Homo sapiens

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*CP*CP*CP*GP*CP*CP*CP*A)-3')	B	9	Homo sapiens

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2019-07-03 
Deposition Author(s): Davis, E.V., Hennig, M., Arya, D.P.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)	United States	GM097917

Revision History  

• Version 1.0: 2019-07-03
  Type: Initial release
  
• Version 1.1: 2019-12-18
  Changes: Author supporting evidence, Data collection
• Version 1.2: 2024-05-01
  Changes: Data collection, Database references