Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product
Bowatte, K., Conrady, D.G., Abendroth, J., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta sliding clamp | 410 | Mycobacterium marinum M | Mutation(s): 0  Gene Names: dnaN, MMAR_0002 | ||
UniProt | |||||
Find proteins for B2HI47 (Mycobacterium marinum (strain ATCC BAA-535 / M)) Explore B2HI47  Go to UniProtKB:  B2HI47 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B2HI47 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Natural product peptide | 11 | Streptomyces muensis | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | E [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Modified Residues 3 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MP8 Query on MP8 | C, D | L-PEPTIDE LINKING | C6 H11 N O2 | PRO | |
MVA Query on MVA | C, D | L-PEPTIDE LINKING | C6 H13 N O2 | VAL | |
NZC Query on NZC | C, D | L-PEPTIDE LINKING | C5 H11 N O3 | THR |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_002311 Query on PRD_002311 | C, D | ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
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a = 80.09 | α = 90 |
b = 76.76 | β = 117.53 |
c = 80.79 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |