6CE1

Crystal structure of Peptidyl Arginine Deiminase Type III (PADI3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 2.3 of the entry. See complete history


Literature

Structural characterization of human peptidyl-arginine deiminase type III by X-ray crystallography

Rechiche, O.Lee, T.V.Lott, J.S.

(2021) Acta Crystallogr F Struct Biol Commun 77: 334-340


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein-arginine deiminase type-3686Homo sapiensMutation(s): 0 
Gene Names: PADI3PAD3PDI3
EC: 3.5.3.15
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ULW8 (Homo sapiens)
Explore Q9ULW8 
Go to UniProtKB:  Q9ULW8
PHAROS:  Q9ULW8
GTEx:  ENSG00000142619 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ULW8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.023α = 90
b = 115.023β = 90
c = 328.487γ = 120
Software Package:
Software NamePurpose
phenix.refinerefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHENIXphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
New Zealand Wool Industry Research LimitedNew ZealandA18223

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-13
    Type: Initial release
  • Version 2.0: 2021-05-19
    Type: Coordinate replacement
    Reason: Polymer geometry
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Source and taxonomy
  • Version 2.1: 2021-10-06
    Changes: Database references
  • Version 2.2: 2021-10-13
    Changes: Database references
  • Version 2.3: 2023-10-04
    Changes: Data collection, Refinement description