6C4O | pdb_00006c4o

AMYLOID FORMING PEPTIDE TIAALLS FROM TRANSTHYRETIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 
    0.228 (Depositor), 0.245 (DCC) 
  • R-Value Work: 
    0.182 (Depositor), 0.187 (DCC) 
  • R-Value Observed: 
    0.187 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 6C4O

This is version 1.2 of the entry. See complete history

Literature

Crystal structures of amyloidogenic segments of human transthyretin.

Saelices, L.Sievers, S.A.Sawaya, M.R.Eisenberg, D.S.

(2018) Protein Sci 27: 1295-1303

  • DOI: https://doi.org/10.1002/pro.3420
  • Primary Citation Related Structures: 
    6C3F, 6C3G, 6C3S, 6C3T, 6C4O, 6C88

  • PubMed Abstract: 

    Amyloid diseases are characterized by the deposition of proteins in the form of amyloid fibrils, in organs that eventually fail. The development of effective drug candidates follows from the understanding of the molecular processes that lead to protein aggregation. Here, we study amyloidogenic segments of transthyretin (TTR). TTR is a transporter of thyroxine and retinol in the blood and cerebrospinal fluid. When mutated and/or as a result of aging, TTR aggregates into amyloid fibrils that accumulate in organs such as the heart. Recently, we reported two amyloidogenic segments that drive amyloid aggregation. Here, we report the crystal structure of another six amyloidogenic segments of TTR. We found that the segments from the C-terminal region of TTR form in-register steric-zippers with highly-interdigitated, wet interfaces, whereas the β-strand B from the N-terminal region of TTR forms an out-of-register assembly, previously associated with oligomeric formation. Our results contribute fundamental information for understanding the mechanism of aggregation of TTR.


  • Organizational Affiliation
    • Departments of Biological Chemistry and Chemistry and Biochemistry, Molecular Biology Institute, Box 951570, UCLA, Howard Hughes Medical Institute, UCLA-DOE Institute, Los Angeles, California, 90095-1570.

Macromolecule Content 

  • Total Structure Weight: 1.38 kDa 
  • Atom Count: 101 
  • Modeled Residue Count: 14 
  • Deposited Residue Count: 14 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
THR-ILE-ALA-ALA-LEU-LEU-SER
A, B
7Homo sapiensMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free:  0.228 (Depositor), 0.245 (DCC) 
  • R-Value Work:  0.182 (Depositor), 0.187 (DCC) 
  • R-Value Observed: 0.187 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 9.597α = 90
b = 17.306β = 95.76
c = 24.998γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2018-07-18
    Changes: Data collection, Database references
  • Version 1.2: 2024-03-13
    Changes: Data collection, Database references