6BTJ | pdb_00006btj

Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab fragment)

• PDB DOI: https://doi.org/10.2210/pdb6BTJ/pdb

• Classification: ANTIVIRAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2017-12-06 Released: 2018-12-19 
• Deposition Author(s): Shanshan, L., Ian, A.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.201 (Depositor), 0.214 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.207 (DCC) 
• R-Value Observed: 
  0.200 (Depositor) 

Literature

Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab fragment)

Andrew, B.W., Ian, A.W., James, E.C., Hannah, T., Shanshan, L., Jesper, P., Sandhya, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 97.1 kDa 
• Atom Count: 7,300 
• Modeled Residue Count: 860 
• Deposited Residue Count: 894 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of H7.5 Fab	A, C [auth H]	233	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain of H7.5 Fab	B, D [auth L]	214	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.201 (Depositor), 0.214 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.207 (DCC) 
• R-Value Observed: 0.200 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.51	α = 90
b = 99.038	β = 90
c = 208.565	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling
PARROT	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-12-19 
Deposition Author(s): Shanshan, L., Ian, A.W.

Revision History  

• Version 1.0: 2018-12-19
  Type: Initial release
  
• Version 2.0: 2023-02-22
  Changes: Advisory, Atomic model, Data collection, Database references, Non-polymer description, Polymer sequence, Source and taxonomy, Structure summary
• Version 2.1: 2024-11-06
  Changes: Data collection, Structure summary