6BHP

Crystal structure of the Chlamydomonas reinhardtii LCI1 channel


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.223 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure and function of LCI1: a plasma membrane CO 2 channel in the Chlamydomonas CO 2 concentrating mechanism.

Kono, A.Chou, T.H.Radhakrishnan, A.Bolla, J.R.Sankar, K.Shome, S.Su, C.C.Jernigan, R.L.Robinson, C.V.Yu, E.W.Spalding, M.H.

(2020) Plant J 102: 1107-1126

  • DOI: https://doi.org/10.1111/tpj.14745
  • Primary Citation of Related Structures:  
    6BHP

  • PubMed Abstract: 

    Microalgae and cyanobacteria contribute roughly half of the global photosynthetic carbon assimilation. Faced with limited access to CO 2 in aquatic environments, which can vary daily or hourly, these microorganisms have evolved use of an efficient CO 2 concentrating mechanism (CCM) to accumulate high internal concentrations of inorganic carbon (C i ) to maintain photosynthetic performance. For eukaryotic algae, a combination of molecular, genetic and physiological studies using the model organism Chlamydomonas reinhardtii, have revealed the function and molecular characteristics of many CCM components, including active C i uptake systems. Fundamental to eukaryotic C i uptake systems are C i transporters/channels located in membranes of various cell compartments, which together facilitate the movement of C i from the environment into the chloroplast, where primary CO 2 assimilation occurs. Two putative plasma membrane C i transporters, HLA3 and LCI1, are reportedly involved in active C i uptake. Based on previous studies, HLA3 clearly plays a meaningful role in HCO 3 - transport, but the function of LCI1 has not yet been thoroughly investigated so remains somewhat obscure. Here we report a crystal structure of the full-length LCI1 membrane protein to reveal LCI1 structural characteristics, as well as in vivo physiological studies in an LCI1 loss-of-function mutant to reveal the C i species preference for LCI1. Together, these new studies demonstrate LCI1 plays an important role in active CO 2 uptake and that LCI1 likely functions as a plasma membrane CO 2 channel, possibly a gated channel.


  • Organizational Affiliation

    Department of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA, 50011, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Membrane protein
A, B, C
200Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q39583 (Chlamydomonas reinhardtii)
Explore Q39583 
Go to UniProtKB:  Q39583
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39583
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.223 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.235α = 90
b = 85.235β = 90
c = 209.784γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
SHELXCDphasing
HKL-2000data reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-11-07
    Type: Initial release
  • Version 1.1: 2024-03-13
    Changes: Data collection, Database references
  • Version 1.2: 2024-05-15
    Changes: Database references