Download MendeleyCatalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
Matoba, Y., Sugiyama, M.To be published.
5Z0H
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K
- PDB DOI: https://doi.org/10.2210/pdb5Z0H/pdb
- Classification: OXIDOREDUCTASE/METAL BINDING PROTEIN
- Organism(s): Streptomyces castaneoglobisporus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-12-19 Released: 2018-12-26
- Funding Organization(s): KAKENHI
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.18 Å
- R-Value Free: 0.171
- R-Value Work: 0.130
- R-Value Observed: 0.131
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosinase | 281 | Streptomyces castaneoglobisporus | Mutation(s): 0 Gene Names: tyrC EC: 1.14.18.1 |  | |
UniProt | |||||
Find proteins for Q83WS2 (Streptomyces castaneoglobisporus) Explore Q83WS2 Go to UniProtKB: Q83WS2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q83WS2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MelC | 134 | Streptomyces castaneoglobisporus | Mutation(s): 0 Gene Names: orf378 |  | |
UniProt | |||||
Find proteins for Q83WS1 (Streptomyces castaneoglobisporus) Explore Q83WS1 Go to UniProtKB: Q83WS1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q83WS1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CU Query on CU | C [auth A], D [auth A], J [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| NO3 Query on NO3 | F [auth A], G [auth A], H [auth A], I [auth A], K [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
| PER Query on PER | E [auth A] | PEROXIDE ION O2 ANAIPYUSIMHBEL-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| DAH Query on DAH | B | L-PEPTIDE LINKING | C9 H11 N O4 |  | PHE |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.18 Å
- R-Value Free: 0.171
- R-Value Work: 0.130
- R-Value Observed: 0.131
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.77 | α = 90 |
| b = 96.98 | β = 90 |
| c = 54.55 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | phasing |
| SHELXL-97 | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-12-26 Deposition Author(s): Matoba, Y., Sugiyama, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| KAKENHI | Japan | 25109530, 15H009470 |
Revision History (Full details and data files)
- Version 1.0: 2018-12-26
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description
