5XM4 | pdb_00005xm4

Solution NMR structure of a new lasso peptide subterisin

• PDB DOI: https://doi.org/10.2210/pdb5XM4/pdb
• BMRB: 36083

• Classification: UNKNOWN FUNCTION
• Organism(s): Novosphingobium subterraneum
• Mutation(s): No 


• Deposited: 2017-05-12 Released: 2018-03-21 
• Deposition Author(s): Hemmi, H., Kodani, S., Kuroha, M., Ohnishi-Kameyama, M.
• Funding Organization(s): the Japan Society for the Promotion of Science

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 300 
• Conformers Submitted: 15 
• Selection Criteria: structures with the lowest energy 

Literature

Isolation and structure determination of a new lasso peptide subterisin from Sphingomonas subterranea

Kuroha, M., Hemmi, H., Ohnishi-Kameyama, M., Kodani, S.

(2017) Tetrahedron Lett 58: 3429-3432

• DOI: https://doi.org/10.1016/j.tetlet.2017.07.064

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 1.72 kDa 
• Atom Count: 119 
• Modeled Residue Count: 17 
• Deposited Residue Count: 17 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	17	Novosphingobium subterraneum	Mutation(s): 0
UniProt
Find proteins for A0A0B8ZWE6 (Novosphingobium subterraneum) Explore A0A0B8ZWE6  Go to UniProtKB:  A0A0B8ZWE6

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 300 
• Conformers Submitted: 15 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-03-21 
Deposition Author(s): Hemmi, H., Kodani, S., Kuroha, M., Ohnishi-Kameyama, M.

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Funding Organization	Location	Grant Number
the Japan Society for the Promotion of Science	Japan	25350964

Revision History  

• Version 1.0: 2018-03-21
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Data collection, Database references, Other
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Structure summary