5XM4 | pdb_00005xm4

Solution NMR structure of a new lasso peptide subterisin

PDB DOI: https://doi.org/10.2210/pdb5XM4/pdb
BMRB: 36083

Classification: UNKNOWN FUNCTION
Organism(s): Novosphingobium subterraneum
Mutation(s): No

Deposited: 2017-05-12 Released: 2018-03-21
Deposition Author(s): Hemmi, H., Kodani, S., Kuroha, M., Ohnishi-Kameyama, M.
Funding Organization(s): the Japan Society for the Promotion of Science

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 300
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 5XM4

This is version 1.2 of the entry. See complete history.

Literature

Isolation and structure determination of a new lasso peptide subterisin from Sphingomonas subterranea

Kuroha, M., Hemmi, H., Ohnishi-Kameyama, M., Kodani, S.

(2017) Tetrahedron Lett 58: 3429-3432

DOI: https://doi.org/10.1016/j.tetlet.2017.07.064

Macromolecule Content

Total Structure Weight: 1.72 kDa
Atom Count: 119
Modeled Residue Count: 17
Deposited Residue Count: 17
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	17	Novosphingobium subterraneum	Mutation(s): 0
UniProt
Find proteins for A0A0B8ZWE6 (Novosphingobium subterraneum) Explore A0A0B8ZWE6 Go to UniProtKB: A0A0B8ZWE6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0B8ZWE6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 300
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2018-03-21

Deposition Author(s):

Ohnishi-Kameyama, M.

Funding Organization	Location	Grant Number
the Japan Society for the Promotion of Science	Japan	25350964

Revision History (Full details and data files)

Version 1.0: 2018-03-21
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.