5WAW | pdb_00005waw

FcAbVance: Increasing our knowledge of antibody structural space to enable faster and better decision-making in antibody drug discovery

• PDB DOI: https://doi.org/10.2210/pdb5WAW/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2017-06-27 Released: 2017-11-08 
• Deposition Author(s): Williams, S.P., Reid, R.A., Convery, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free: 
  0.280 (Depositor), 0.307 (DCC) 
• R-Value Work: 
  0.231 (Depositor), 0.249 (DCC) 
• R-Value Observed: 
  0.234 (Depositor) 

Literature

AbVance: Increasing our knowledge of antibody structural space to enable faster and better decision-making in antibody drug discovery.

Williams, S.P., Reid, R.A., Convery, M.A.

Not Published 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 47.37 kDa 
• Atom Count: 3,271 
• Modeled Residue Count: 433 
• Deposited Residue Count: 436 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
fAb Light Chain	A [auth L]	219	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
fAb Heavy Chain	B [auth H]	217	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	F [auth L]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
ZN	C [auth L], D [auth L], E [auth L], G [auth H]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free:  0.280 (Depositor), 0.307 (DCC) 
• R-Value Work:  0.231 (Depositor), 0.249 (DCC) 
• R-Value Observed: 0.234 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 132.018	α = 90
b = 58.014	β = 124.38
c = 80.442	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-11-08 
Deposition Author(s): Williams, S.P., Reid, R.A., Convery, M.

Revision History  

• Version 1.0: 2017-11-08
  Type: Initial release
  
• Version 1.1: 2019-05-22
  Changes: Data collection, Database references
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary