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FcAbVance: Increasing our knowledge of antibody structural space to enable faster and better decision-making in antibody drug discovery
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 0.1m MES pH6.5, 0.01M ZnSO4, 25% v/v PEG 550 MME
Crystal Properties Matthews coefficient Solvent content 2.7 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.018 α = 90 b = 58.014 β = 124.38 c = 80.442 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 98.5 0.052 20 3.8 19210
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 26.58 19210 1464 85.94 0.23431 0.23089 0.2488 0.27956 0.3069 RANDOM 69.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.31 -3.07 15.85 -2.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.355 r_dihedral_angle_4_deg 15.654 r_dihedral_angle_3_deg 15.005 r_long_range_B_refined 9.895 r_long_range_B_other 9.895 r_dihedral_angle_1_deg 7.346 r_mcangle_it 5.672 r_mcangle_other 5.671 r_scangle_other 5.56 r_mcbond_it 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.355 r_dihedral_angle_4_deg 15.654 r_dihedral_angle_3_deg 15.005 r_long_range_B_refined 9.895 r_long_range_B_other 9.895 r_dihedral_angle_1_deg 7.346 r_mcangle_it 5.672 r_mcangle_other 5.671 r_scangle_other 5.56 r_mcbond_it 3.55 r_mcbond_other 3.55 r_scbond_it 3.506 r_scbond_other 3.502 r_angle_refined_deg 1.336 r_angle_other_deg 0.912 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3214 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing