5U9O | pdb_00005u9o

Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1

PDB DOI: https://doi.org/10.2210/pdb5U9O/pdb

Classification: CELL CYCLE
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-16 Released: 2017-12-20
Deposition Author(s): Delmar, J.A., Chou, T.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.37 Å
R-Value Free:
0.318 (Depositor), 0.316 (DCC)
R-Value Work:
0.250 (Depositor), 0.248 (DCC)
R-Value Observed:
0.254 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1

Delmar, J.A., Yu, E.W., Osteryoung, K.W.

To be published.

Macromolecule Content

Total Structure Weight: 169.33 kDa
Atom Count: 9,299
Modeled Residue Count: 1,145
Deposited Residue Count: 1,496
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plastid division protein CDP1, chloroplastic,Plastid division protein PDV1	A, B, C, D, E A, B, C, D, E, F, G, H	187	Arabidopsis thaliana	Mutation(s): 0 Gene Names: CDP1, ARC6H, PARC6, At3g19180, MVI11.9, PDV1, At5g53280, K19E1.8
UniProt
Find proteins for Q8VY16 (Arabidopsis thaliana) Explore Q8VY16 Go to UniProtKB: Q8VY16
Find proteins for Q9FK13 (Arabidopsis thaliana) Explore Q9FK13 Go to UniProtKB: Q9FK13
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q9FK13 Q8VY16
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.37 Å
R-Value Free: 0.318 (Depositor), 0.316 (DCC)
R-Value Work: 0.250 (Depositor), 0.248 (DCC)
R-Value Observed: 0.254 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.227	α = 88.36
b = 80.192	β = 80.99
c = 84.07	γ = 83.49

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
Coot	refinement
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-12-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-12-20
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.