Annotations: 5U9O

Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	SBP_bac_1	e5u9oH1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
G	SBP_bac_1	e5u9oG1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
F	SBP_bac_1	e5u9oF1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
E	SBP_bac_1	e5u9oE1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
D	SBP_bac_1	e5u9oD1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
C	SBP_bac_1	e5u9oC1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
B	SBP_bac_1	e5u9oB1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)
A	SBP_bac_1	e5u9oA1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: SBP_bac_1	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF13355	ARC6-like, IMS domain (ARC6-like_IMS)	ARC6-like, IMS domain	This domain corresponds to the C-terminal intermembrane space (IMS) region from protein accumulation and replication of chloroplasts 6 (ARC6) and its paralogue PARC6 [1]. ARC6 and PARC6 are components of the plastid division machinery which are essen ...	This domain corresponds to the C-terminal intermembrane space (IMS) region from protein accumulation and replication of chloroplasts 6 (ARC6) and its paralogue PARC6 [1]. ARC6 and PARC6 are components of the plastid division machinery which are essential for the chloroplast replication process [1,2], which implies the assembly and constriction of the tubulin-like FtsZ ring on the stromal surface of the inner envelope membrane (IEM) and the dynamin-like ARC5 ring on the cytosolic surface of the outer envelope membrane (OEM). ARC6 is evolutionarily related to the cyanobacterial cell division protein Ftn2/ZipN [1], having similar structures. This domain from ARC6 and PARC6 interacts with PDV2 and PDV1 respectively. PDV proteins recruit dynamin-like ARC5 ring to the chloroplast surface and mediates its constriction. ARC6/PARC6 are key to connect and coordinate Fst and ARC5 rings during fission [3,4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Plastid division protein CDP1, chloroplastic,Plastid division protein PDV1	binding ion binding anion binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol-4-phosphate binding small molecule binding	cellular component organization organelle organization organelle fission cellular process cellular component organization or biogenesis plastid fission chloroplast fission plastid organization chloroplast organization response to gibberellin response to lipid response to stimulus response to hormone response to chemical cellular component organization organelle organization organelle fission cellular process cellular component organization or biogenesis plastid fission chloroplast fission plastid organization chloroplast organization response to gibberellin response to lipid response to stimulus response to hormone response to chemical response to endogenous stimulus response to oxygen-containing compound	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast plastid membrane organelle inner membrane membrane chloroplast envelope plastid inner membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast plastid membrane organelle inner membrane membrane chloroplast envelope plastid inner membrane organelle envelope chloroplast membrane chloroplast inner membrane organelle membrane plastid envelope organelle outer membrane plastid outer membrane chloroplast outer membrane bounding membrane of organelle outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR044685	Plastid division protein CDP1-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR058032	Plastid division protein CDP1-like, 1st alpha solenoid domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR057137	Plastid division protein CDP1-like, 2nd alpha solenoid domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR025344	Plastid division protein CDP1-like, IMS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038939	Plastid division protein PDV1/PDV2	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5U9O | pdb_00005u9o

Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage