5N6R | pdb_00005n6r

Solution structure of the Dbl-homology domain of Bcr-Abl


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 5N6R

This is version 1.3 of the entry. See complete history

Literature

Structural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase.

Reckel, S.Gehin, C.Tardivon, D.Georgeon, S.Kukenshoner, T.Lohr, F.Koide, A.Buchner, L.Panjkovich, A.Reynaud, A.Pinho, S.Gerig, B.Svergun, D.Pojer, F.Guntert, P.Dotsch, V.Koide, S.Gavin, A.C.Hantschel, O.

(2017) Nat Commun 8: 2101-2101

  • DOI: https://doi.org/10.1038/s41467-017-02313-6
  • Primary Citation Related Structures: 
    5N6R, 5N7E, 5OC7

  • PubMed Abstract: 

    The two isoforms of the Bcr-Abl tyrosine kinase, p210 and p190, are associated with different leukemias and have a dramatically different signaling network, despite similar kinase activity. To provide a molecular rationale for these observations, we study the Dbl-homology (DH) and Pleckstrin-homology (PH) domains of Bcr-Abl p210, which constitute the only structural differences to p190. Here we report high-resolution structures of the DH and PH domains and characterize conformations of the DH-PH unit in solution. Our structural and functional analyses show no evidence that the DH domain acts as a guanine nucleotide exchange factor, whereas the PH domain binds to various phosphatidylinositol-phosphates. PH-domain mutants alter subcellular localization and result in decreased interactions with p210-selective interaction partners. Hence, the PH domain, but not the DH domain, plays an important role in the formation of the differential p210 and p190 Bcr-Abl signaling networks.


  • Organizational Affiliation
    • Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, École polytechnique fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 24.84 kDa 
  • Atom Count: 1,744 
  • Modeled Residue Count: 218 
  • Deposited Residue Count: 218 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Breakpoint cluster region protein218Homo sapiensMutation(s): 0 
Gene Names: BCRBCR1D22S11
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for P11274 (Homo sapiens)
Explore P11274 
Go to UniProtKB:  P11274
PHAROS:  P11274
GTEx:  ENSG00000186716 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP11274
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_140913
European UnionGermany261863

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-27
    Type: Initial release
  • Version 1.1: 2018-01-17
    Changes: Source and taxonomy
  • Version 1.2: 2019-05-08
    Changes: Data collection
  • Version 1.3: 2024-06-19
    Changes: Data collection, Database references