5F0U | pdb_00005f0u

Crystal structure of Gold binding protein

• PDB DOI: https://doi.org/10.2210/pdb5F0U/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Salmonella enterica subsp. enterica serovar Give str. S5-487
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-11-28 Released: 2017-01-18 
• Deposition Author(s): Wei, W., Wang, F., Zhao, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 
  0.227 (Depositor), 0.246 (DCC) 
• R-Value Work: 
  0.197 (Depositor), 0.209 (DCC) 
• R-Value Observed: 
  0.199 (Depositor) 

Literature

Structure of tetrasilver bound to GolB at 1.70 Angstroms resolution

Wei, W., Zhao, J., Wang, F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 7.47 kDa 
• Atom Count: 540 
• Modeled Residue Count: 65 
• Deposited Residue Count: 65 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative copper chaperone	A	65	Salmonella enterica subsp. enterica serovar Give str. S5-487	Mutation(s): 0  Gene Names: LTSEGIV_0549
UniProt
Find proteins for A0A140UHB4 (Salmonella typhimurium) Explore A0A140UHB4  Go to UniProtKB:  A0A140UHB4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AG	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A]	SILVER ION Ag FOIXSVOLVBLSDH-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free:  0.227 (Depositor), 0.246 (DCC) 
• R-Value Work:  0.197 (Depositor), 0.209 (DCC) 
• R-Value Observed: 0.199 (Depositor) 

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.095	α = 90
b = 37.095	β = 90
c = 170.032	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-01-18 
Deposition Author(s): Wei, W., Wang, F., Zhao, J.

Revision History  

• Version 1.0: 2017-01-18
  Type: Initial release
  
• Version 1.1: 2017-09-27
  Changes: Data collection
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references, Derived calculations