5F0U | pdb_00005f0u

Crystal structure of Gold binding protein

PDB DOI: https://doi.org/10.2210/pdb5F0U/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Salmonella enterica subsp. enterica serovar Give str. S5-487
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-11-28 Released: 2017-01-18
Deposition Author(s): Wei, W., Wang, F., Zhao, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free:
0.227 (Depositor), 0.246 (DCC)
R-Value Work:
0.197 (Depositor), 0.209 (DCC)
R-Value Observed:
0.199 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structure of tetrasilver bound to GolB at 1.70 Angstroms resolution

Wei, W., Zhao, J., Wang, F.

To be published.

Macromolecule Content

Total Structure Weight: 7.47 kDa
Atom Count: 540
Modeled Residue Count: 65
Deposited Residue Count: 65
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative copper chaperone	A	65	Salmonella enterica subsp. enterica serovar Give str. S5-487	Mutation(s): 0 Gene Names: LTSEGIV_0549
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AG Query on AG Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain E [auth A] SDF format, chain D [auth A] SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A]	SILVER ION Ag FOIXSVOLVBLSDH-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.227 (Depositor), 0.246 (DCC)
R-Value Work: 0.197 (Depositor), 0.209 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.095	α = 90
b = 37.095	β = 90
c = 170.032	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-01-18

Deposition Author(s):

Wei, W.

Wang, F.

Zhao, J.

Revision History (Full details and data files)

Version 1.0: 2017-01-18
Type: Initial release
Version 1.1: 2017-09-27
Changes: Data collection
Version 1.2: 2024-03-20
Changes: Data collection, Database references, Derived calculations