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Crystal structure of Gold binding protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 2.0 M Ammonium citrate tribasic, 0.1 M BIS-TRIS propane
Crystal Properties Matthews coefficient Solvent content 2.44 49.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.095 α = 90 b = 37.095 β = 90 c = 170.032 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2014-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 50 98 24.31 11.6 8466
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.71 3.756 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.68 32.13 7910 390 96.55 0.19884 0.19749 0.2086 0.22699 0.2462 RANDOM 31.294
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 -0.03 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.004 r_dihedral_angle_4_deg 14.95 r_dihedral_angle_3_deg 14.204 r_long_range_B_refined 10.209 r_long_range_B_other 10.121 r_scangle_other 8.541 r_dihedral_angle_1_deg 6.581 r_scbond_it 5.518 r_scbond_other 5.506 r_mcangle_other 4.916
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.004 r_dihedral_angle_4_deg 14.95 r_dihedral_angle_3_deg 14.204 r_long_range_B_refined 10.209 r_long_range_B_other 10.121 r_scangle_other 8.541 r_dihedral_angle_1_deg 6.581 r_scbond_it 5.518 r_scbond_other 5.506 r_mcangle_other 4.916 r_mcangle_it 4.909 r_mcbond_it 3.378 r_mcbond_other 3.308 r_angle_refined_deg 1.582 r_angle_other_deg 0.804 r_chiral_restr 0.103 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 481 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction