5ZYR | pdb_00005zyr

Crystal structure of the reductase (C1) component of p-hydroxyphenylacetate 3-hydroxylase (HPAH) from Acinetobacter baumannii

PDB DOI: https://doi.org/10.2210/pdb5ZYR/pdb

Classification: FLAVOPROTEIN
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-05-28 Released: 2019-06-05
Deposition Author(s): Oonanant, W., Phongsak, T., Sucharitakul, J., Chaiyen, P., Yuvaniyama, J.
Funding Organization(s): Synchrotron Light Research Institute

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.219 (Depositor), 0.222 (DCC)
R-Value Work:
0.170 (Depositor), 0.171 (DCC)
R-Value Observed:
0.172 (Depositor)

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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the reductase (C1) component of p-hydroxyphenylacetate 3-hydroxylase (HPAH) from Acinetobacter baumannii

Oonanant, W., Phongsak, T., Sucharitakul, J., Chaiyen, P., Yuvaniyama, J.

To be published.

Macromolecule Content

Total Structure Weight: 71.94 kDa
Atom Count: 5,060
Modeled Residue Count: 612
Deposited Residue Count: 630
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
p-hydroxyphenylacetate 3-hydroxylase, reductase component	A, B	315	Acinetobacter baumannii	Mutation(s): 0 Gene Names: C1-hpah EC: 1.5.1.36
UniProt
Find proteins for Q6Q271 (Acinetobacter baumannii) Explore Q6Q271 Go to UniProtKB: Q6Q271
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6Q271
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN Query on FMN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B] mmCIF format, chain C [auth A] mmCIF format, chain E [auth B]	C [auth A], E [auth B]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.219 (Depositor), 0.222 (DCC)
R-Value Work: 0.170 (Depositor), 0.171 (DCC)
R-Value Observed: 0.172 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.992	α = 90
b = 59.9	β = 90
c = 212.3	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing
Coot	model building
PHENIX	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-06-05

Deposition Author(s):

Sucharitakul, J.

Funding Organization	Location	Grant Number
Synchrotron Light Research Institute	Thailand	2-2549/LS02
	Thailand	--

Revision History (Full details and data files)

Version 1.0: 2019-06-05
Type: Initial release
Version 1.1: 2024-03-27
Changes: Advisory, Data collection, Database references

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