5Z32 | pdb_00005z32

LPS bound solution NMR structure of WS2-VR18


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 5Z32

This is version 1.2 of the entry. See complete history

Literature

Application of tungsten disulfide quantum dot-conjugated antimicrobial peptides in bio-imaging and antimicrobial therapy.

Mohid, S.A.Ghorai, A.Ilyas, H.Mroue, K.H.Narayanan, G.Sarkar, A.Ray, S.K.Biswas, K.Bera, A.K.Malmsten, M.Midya, A.Bhunia, A.

(2019) Colloids Surf B Biointerfaces 176: 360-370

  • DOI: https://doi.org/10.1016/j.colsurfb.2019.01.020
  • Primary Citation Related Structures: 
    5Z31, 5Z32

  • PubMed Abstract: 

    Two-dimensional (2D) tungsten disulfide (WS 2 ) quantum dots offer numerous promising applications in materials and optoelectronic sciences. Additionally, the catalytic and photoluminescence properties of ultra-small WS 2 nanoparticles are of potential interest in biomedical sciences. Addressing the use of WS 2 in the context of infection, the present study describes the conjugation of two potent antimicrobial peptides with WS 2 quantum dots, as well as the application of the resulting conjugates in antimicrobial therapy and bioimaging. In doing so, we determined the three-dimensional solution structure of the quantum dot-conjugated antimicrobial peptide by a series of high-resolution nuclear magnetic resonance (NMR) techniques, correlating this to the disruption of both model lipid and bacterial membranes, and to several key biological performances, including antimicrobial and anti-biofilm effects, as well as cell toxicity. The results demonstrate that particle conjugation enhances the antimicrobial and anti-biofilm potency of these peptides, effects inferred to be due to multi-dendate interactions for the conjugated peptides. As such, our study provides information on the mode-of-action of such conjugates, laying the foundation for their potential use in treatment and monitoring of infections.


  • Organizational Affiliation
    • Department of Biophysics, Bose Institute, Kolkata, 700054, India.

Macromolecule Content 

  • Total Structure Weight: 2.07 kDa 
  • Atom Count: 144 
  • Modeled Residue Count: 18 
  • Deposited Residue Count: 18 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
VAL-ALA-ARG-GLY-TRP-GLY-ARG-LYS-CYS-PRO-LEU-PHE-GLY-LYS-ASN-LYS-SER-ARG18synthetic constructMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
DST for Indo-Sweden Joint Project GrantIndiaDST/INT/SWD/VR/P-02/2014

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references