5Z2Q | pdb_00005z2q

Vgll1-TEAD4 core complex

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 
    0.246 (Depositor), 0.255 (DCC) 
  • R-Value Work: 
    0.201 (Depositor), 0.226 (DCC) 
  • R-Value Observed: 
    0.203 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history. 

Literature

Structural and functional similarity between the Vgll1-TEAD and the YAP-TEAD complexes.

Pobbati, A.V., Chan, S.W., Lee, I., Song, H., Hong, W.

(2012) Structure 20: 1135-1140

  • DOI: https://doi.org/10.1016/j.str.2012.04.004
  • Primary Citation Related Structures: 
    5Z2Q

  • PubMed Abstract: 

    The structure of the complex between the transcription cofactor Vgll1 and the transcription factor TEAD4, the mammalian equivalent of the Drosophila Vestigial and Scalloped, respectively, is determined in this study. Remarkably, Vgll1 interacts with TEAD in a manner similar to the transcription coactivators, as well as oncogenes YAP and TAZ, despite having a varied primary sequence. Vgll1-TEAD complex upregulates the expression of IGFBP-5, a proliferation-promoting gene, and facilitates anchorage-independent cell proliferation. The YAP/TAZ-TEAD complex also upregulates several other proliferation-promoting genes and also promotes anchorage-independent cell proliferation. Given its structural and functional similarity to YAP/TAZ, Vgll1 has the potential to promote cancer progression.

    • Organizational Affiliation: 
    • Cell Biology in Health and Disease Division, Institute of Molecular and Cell Biology, Proteos, Singapore 138673. ajaybabuvp@imcb.a-star.edu.sg

Macromolecule Content 

  • Total Structure Weight: 64.66 kDa 
  • Atom Count: 4,148 
  • Modeled Residue Count: 505 
  • Deposited Residue Count: 551 
  • Unique protein chains: 4

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription cofactor vestigial-like protein 1A [auth C]48Mus musculusMutation(s): 0 
Gene Names: Vgll1
UniProt
Find proteins for Q99NC0 (Mus musculus)
Explore Q99NC0 
Go to UniProtKB:  Q99NC0
Entity Groups
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UniProt GroupQ99NC0
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Reference Sequence
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|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription cofactor vestigial-like protein 1B [auth D]49Mus musculusMutation(s): 0 
Gene Names: Vgll1
UniProt
Find proteins for Q99NC0 (Mus musculus)
Explore Q99NC0 
Go to UniProtKB:  Q99NC0
Entity Groups
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UniProt GroupQ99NC0
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-3C [auth A]226Mus musculusMutation(s): 0 
Gene Names: Tead4, Tcf13r1, Tef3, Tefr1
UniProt
Find proteins for Q62296 (Mus musculus)
Explore Q62296 
Go to UniProtKB:  Q62296
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UniProt GroupQ62296
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-3D [auth B]228Mus musculusMutation(s): 0 
Gene Names: Tead4, Tcf13r1, Tef3, Tefr1
UniProt
Find proteins for Q62296 (Mus musculus)
Explore Q62296 
Go to UniProtKB:  Q62296
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UniProt GroupQ62296
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PO4

Query on PO4


Download:Ideal Coordinates CCD File
E [auth B]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free:  0.246 (Depositor), 0.255 (DCC) 
  • R-Value Work:  0.201 (Depositor), 0.226 (DCC) 
  • R-Value Observed: 0.203 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.931α = 90
b = 113.931β = 90
c = 144.357γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-31
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description