Mutagenesis-induced conformational change in domain B of a pullulan-hydrolyzing alpha-amylase TVA I
Tonozuka, T., Nihira, T., Mizuno, M., Nishikawa, A., Kamitori, S.(2018) Amylase 2: 1-10
Experimental Data Snapshot
Starting Model: experimental
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(2018) Amylase 2: 1-10
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Neopullulanase 1 | 626 | Thermoactinomyces vulgaris | Mutation(s): 0  Gene Names: tvaI EC: 3.2.1.135 | ||
UniProt | |||||
Find proteins for Q60053 (Thermoactinomyces vulgaris) Explore Q60053  Go to UniProtKB:  Q60053 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q60053 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | E [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
CA Query on CA | B [auth A], C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 76.972 | α = 90 |
b = 54.022 | β = 100.07 |
c = 77.907 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
iMOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science | Japan | 16K07687 |