5YZU | pdb_00005yzu

Crystal structure of KAS III from Acinetobacter baumannii

• PDB DOI: https://doi.org/10.2210/pdb5YZU/pdb

• Classification: TRANSFERASE
• Organism(s): Acinetobacter baumannii
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-12-15 Released: 2018-12-19 
• Deposition Author(s): Lee, W.C., Jung, M., Lee, J., Kim, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.12 Å
• R-Value Free: 
  0.255 (Depositor), 0.257 (DCC) 
• R-Value Work: 
  0.198 (Depositor), 0.198 (DCC) 
• R-Value Observed: 
  0.201 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a novel KAS III from Acinetobacter baumannii

Lee, W.C., Jung, M., Lee, J., Kim, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 80.99 kDa 
• Atom Count: 5,845 
• Modeled Residue Count: 734 
• Deposited Residue Count: 736 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III C terminal family protein	A, B	368	Acinetobacter baumannii	Mutation(s): 0  EC: 2.3.1.180 (PDB Primary Data), 2.3.1.41 (PDB Primary Data)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.12 Å
• R-Value Free:  0.255 (Depositor), 0.257 (DCC) 
• R-Value Work:  0.198 (Depositor), 0.198 (DCC) 
• R-Value Observed: 0.201 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.004	α = 90
b = 88.395	β = 116.48
c = 77.613	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2018-12-19 
Deposition Author(s): Lee, W.C., Jung, M., Lee, J., Kim, Y.

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Funding Organization	Location	Grant Number
	Korea, Republic Of	--

Revision History  

• Version 1.0: 2018-12-19
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description