5YZL | pdb_00005yzl

Crystal structure of human Archease D178A

• PDB DOI: https://doi.org/10.2210/pdb5YZL/pdb

• Classification: CHAPERONE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2017-12-15 Released: 2019-01-02 
• Deposition Author(s): Duan, S.Y., Li, J.X.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.40 Å
• R-Value Free: 
  0.251 (Depositor), 0.264 (DCC) 
• R-Value Work: 
  0.188 (Depositor), 0.176 (DCC) 

Starting Model: experimental

Literature

Structural and mechanistic insights into human Archease mutant D178A

Duan, S.Y., Li, J.X.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 43.59 kDa 
• Atom Count: 2,617 
• Modeled Residue Count: 318 
• Deposited Residue Count: 376 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein archease	A, B	188	Homo sapiens	Mutation(s): 1  Gene Names: ZBTB8OS EC: 2.7.7
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IWT0 (Homo sapiens) Explore Q8IWT0  Go to UniProtKB:  Q8IWT0
PHAROS:  Q8IWT0 GTEx:  ENSG00000176261

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.40 Å
• R-Value Free:  0.251 (Depositor), 0.264 (DCC) 
• R-Value Work:  0.188 (Depositor), 0.176 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.686	α = 90
b = 59.62	β = 90
c = 133.192	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MLPHARE	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2019-01-02 
Deposition Author(s): Duan, S.Y., Li, J.X.

---

Funding Organization	Location	Grant Number
	China	--

Revision History  

• Version 1.0: 2019-01-02
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description