Crystal structure of rat hematopoietic prostaglandin D synthase
Kamo, M., Furubayashi, N., Inaka, K., Tanaka, H., Aritake, K., Urade, Y.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hematopoietic prostaglandin D synthase | 199 | Rattus norvegicus | Mutation(s): 0  Gene Names: Hpgds, Gsts, Pgds, Ptgds2 EC: 5.3.99.2 (PDB Primary Data), 2.5.1.18 (PDB Primary Data) | ![]() | |
UniProt | |||||
Find proteins for O35543 (Rattus norvegicus) Explore O35543  Go to UniProtKB:  O35543 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O35543 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GSH Query on GSH | C [auth A], L [auth B] | GLUTATHIONE C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N | |||
PGE Query on PGE | O [auth B], P [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
GOL Query on GOL | K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
DIO Query on DIO | F [auth A], G [auth A], M [auth B], N [auth B] | 1,4-DIETHYLENE DIOXIDE C4 H8 O2 RYHBNJHYFVUHQT-UHFFFAOYSA-N | |||
EDO Query on EDO | H [auth A], I [auth A], J [auth A], Q [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | D [auth A], E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 54.54 | α = 90 |
b = 79.84 | β = 90 |
c = 96.6 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
MOSFLM | data collection |
Aimless | data scaling |
MOLREP | phasing |
PDB_EXTRACT | data extraction |