5XHL | pdb_00005xhl

Crystal Structure of HasAp with Gallium Phthalocyanine

PDB DOI: https://doi.org/10.2210/pdb5XHL/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-04-21 Released: 2017-12-06
Deposition Author(s): Shoji, O., Shisaka, Y., Iwai, Y., Sugimoto, H., Shiro, Y., Watanabe, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.238 (Depositor), 0.241 (DCC)
R-Value Work:
0.190 (Depositor), 0.197 (DCC)
R-Value Observed:
0.193 (Depositor)

Starting Model: experimental
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Literature

Crystal Structure of HasAp with Gallium Phthalocyanine

Shoji, O., Shisaka, Y., Iwai, Y., Sugimoto, H., Shiro, Y., Watanabe, Y.

To be published.

Macromolecule Content

Total Structure Weight: 38.97 kDa
Atom Count: 2,779
Modeled Residue Count: 366
Deposited Residue Count: 368
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heme acquisition protein HasAp	A, B	184	Pseudomonas aeruginosa PAO1	Mutation(s): 0 Gene Names: hasAp, PA3407
UniProt
Find proteins for G3XD33 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore G3XD33 Go to UniProtKB: G3XD33
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G3XD33
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
VPC Query on VPC Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	Phthalocyanine containing GA C₃₂ H₁₆ Ga N₈ WBSOKGMOXCALAG-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.238 (Depositor), 0.241 (DCC)
R-Value Work: 0.190 (Depositor), 0.197 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 153.625	α = 90
b = 153.625	β = 90
c = 36.761	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data collection
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
DENZO	data reduction
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-12-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-12-06
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.