Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
Nakamichi, Y., Higashiura, A., Narita, H., Hagiwara, K., Uehara-Ichiki, T., Omura, T., Nakagawa, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mRNA capping enzyme P5 | A [auth C], B [auth A], C [auth D], D [auth B] | 804 | Rice dwarf virus (isolate O) | Mutation(s): 0  EC: 2.7.7.50 | |
UniProt | |||||
Find proteins for P14583 (Rice dwarf virus (isolate Akita)) Explore P14583  Go to UniProtKB:  P14583 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14583 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GTP Query on GTP | E [auth C], G [auth A], I [auth D], K [auth B] | GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N | |||
GDP Query on GDP | F [auth C], H [auth A], J [auth D], L [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 77.394 | α = 103.1 |
b = 83.447 | β = 101.98 |
c = 141.979 | γ = 95.69 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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JSPS | Japan | JP25251009 |