5X2B

Crystal structure of mouse sulfotransferase SULT7A1 complexed with PAP

PDB DOI: https://doi.org/10.2210/pdb5X2B/pdb

Classification: TRANSFERASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-01-31 Released: 2018-03-28
Deposition Author(s): Kanekiyo, M., Teramoto, T., Kakuta, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free: 0.236
R-Value Work: 0.221
R-Value Observed: 0.222

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of mouse sulfotransferase SULT7A1 complexed with PAP

Tanaka, S., Kakuta, Y.

To be published.

Macromolecule Content

Total Structure Weight: 397.62 kDa
Atom Count: 29,402
Modelled Residue Count: 3,339
Deposited Residue Count: 3,390
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfotransferase	A [auth C] B [auth A] C [auth B] E I A [auth C], B [auth A], C [auth B], E, I, K, L	283	Mus musculus	Mutation(s): 0 Gene Names: Sult6b2, Gm766 EC: 2.8.2
UniProt
Find proteins for B7ZWN4 (Mus musculus) Explore B7ZWN4 Go to UniProtKB: B7ZWN4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B7ZWN4
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfotransferase	D	281	Mus musculus	Mutation(s): 0 Gene Names: Sult6b2, Gm766 EC: 2.8.2
UniProt
Find proteins for B7ZWN4 (Mus musculus) Explore B7ZWN4 Go to UniProtKB: B7ZWN4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B7ZWN4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfotransferase	F, G, H, J	282	Mus musculus	Mutation(s): 0 Gene Names: Sult6b2, Gm766 EC: 2.8.2
UniProt
Find proteins for B7ZWN4 (Mus musculus) Explore B7ZWN4 Go to UniProtKB: B7ZWN4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B7ZWN4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A3P Query on A3P Download Ideal Coordinates CCD File SDF format, chain BA [auth F] SDF format, chain EA [auth G] SDF format, chain HA [auth H] SDF format, chain JA [auth I] SDF format, chain LA [auth J] SDF format, chain M [auth C] SDF format, chain O [auth A] SDF format, chain PA [auth K] SDF format, chain R [auth B] SDF format, chain SA [auth L] SDF format, chain V [auth D] SDF format, chain Z [auth E] MOL2 format, chain BA [auth F] MOL2 format, chain EA [auth G] MOL2 format, chain HA [auth H] MOL2 format, chain JA [auth I] MOL2 format, chain LA [auth J] MOL2 format, chain M [auth C] MOL2 format, chain O [auth A] MOL2 format, chain PA [auth K] MOL2 format, chain R [auth B] MOL2 format, chain SA [auth L] MOL2 format, chain V [auth D] MOL2 format, chain Z [auth E] mmCIF format, chain BA [auth F] mmCIF format, chain EA [auth G] mmCIF format, chain HA [auth H] mmCIF format, chain JA [auth I] mmCIF format, chain LA [auth J] mmCIF format, chain M [auth C] mmCIF format, chain O [auth A] mmCIF format, chain PA [auth K] mmCIF format, chain R [auth B] mmCIF format, chain SA [auth L] mmCIF format, chain V [auth D] mmCIF format, chain Z [auth E]	BA [auth F] EA [auth G] HA [auth H] JA [auth I] LA [auth J] BA [auth F], EA [auth G], HA [auth H], JA [auth I], LA [auth J], M [auth C], O [auth A], PA [auth K], R [auth B], SA [auth L], V [auth D], Z [auth E]	ADENOSINE-3'-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ WHTCPDAXWFLDIH-KQYNXXCUSA-N		Interactions Focus chain BA [auth F] Focus chain EA [auth G] Focus chain HA [auth H] Focus chain JA [auth I] Focus chain LA [auth J] Focus chain M [auth C] Focus chain O [auth A] Focus chain PA [auth K] Focus chain R [auth B] Focus chain SA [auth L] Focus chain V [auth D] Focus chain Z [auth E] Interactions & Density Focus chain BA [auth F] Focus chain EA [auth G] Focus chain HA [auth H] Focus chain JA [auth I] Focus chain LA [auth J] Focus chain M [auth C] Focus chain O [auth A] Focus chain PA [auth K] Focus chain R [auth B] Focus chain SA [auth L] Focus chain V [auth D] Focus chain Z [auth E]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain DA [auth F] SDF format, chain OA [auth J] MOL2 format, chain DA [auth F] MOL2 format, chain OA [auth J] mmCIF format, chain DA [auth F] mmCIF format, chain OA [auth J]	DA [auth F], OA [auth J]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain DA [auth F] Focus chain OA [auth J] Interactions & Density Focus chain DA [auth F] Focus chain OA [auth J]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain AA [auth E] SDF format, chain CA [auth F] SDF format, chain FA [auth G] SDF format, chain GA [auth G] SDF format, chain IA [auth H] SDF format, chain KA [auth I] SDF format, chain MA [auth J] SDF format, chain N [auth C] SDF format, chain NA [auth J] SDF format, chain P [auth A] SDF format, chain Q [auth A] SDF format, chain QA [auth K] SDF format, chain RA [auth K] SDF format, chain S [auth B] SDF format, chain T [auth B] SDF format, chain TA [auth L] SDF format, chain U [auth B] SDF format, chain W [auth D] SDF format, chain X [auth D] SDF format, chain Y [auth D] MOL2 format, chain AA [auth E] MOL2 format, chain CA [auth F] MOL2 format, chain FA [auth G] MOL2 format, chain GA [auth G] MOL2 format, chain IA [auth H] MOL2 format, chain KA [auth I] MOL2 format, chain MA [auth J] MOL2 format, chain N [auth C] MOL2 format, chain NA [auth J] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain QA [auth K] MOL2 format, chain RA [auth K] MOL2 format, chain S [auth B] MOL2 format, chain T [auth B] MOL2 format, chain TA [auth L] MOL2 format, chain U [auth B] MOL2 format, chain W [auth D] MOL2 format, chain X [auth D] MOL2 format, chain Y [auth D] mmCIF format, chain AA [auth E] mmCIF format, chain CA [auth F] mmCIF format, chain FA [auth G] mmCIF format, chain GA [auth G] mmCIF format, chain IA [auth H] mmCIF format, chain KA [auth I] mmCIF format, chain MA [auth J] mmCIF format, chain N [auth C] mmCIF format, chain NA [auth J] mmCIF format, chain P [auth A] mmCIF format, chain Q [auth A] mmCIF format, chain QA [auth K] mmCIF format, chain RA [auth K] mmCIF format, chain S [auth B] mmCIF format, chain T [auth B] mmCIF format, chain TA [auth L] mmCIF format, chain U [auth B] mmCIF format, chain W [auth D] mmCIF format, chain X [auth D] mmCIF format, chain Y [auth D]	AA [auth E] CA [auth F] FA [auth G] GA [auth G] IA [auth H] AA [auth E], CA [auth F], FA [auth G], GA [auth G], IA [auth H], KA [auth I], MA [auth J], N [auth C], NA [auth J], P [auth A], Q [auth A], QA [auth K], RA [auth K], S [auth B], T [auth B], TA [auth L], U [auth B], W [auth D], X [auth D], Y [auth D]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain AA [auth E] Focus chain CA [auth F] Focus chain FA [auth G] Focus chain GA [auth G] Focus chain IA [auth H] Focus chain KA [auth I] Focus chain MA [auth J] Focus chain N [auth C] Focus chain NA [auth J] Focus chain P [auth A] Focus chain Q [auth A] Focus chain QA [auth K] Focus chain RA [auth K] Focus chain S [auth B] Focus chain T [auth B] Focus chain TA [auth L] Focus chain U [auth B] Focus chain W [auth D] Focus chain X [auth D] Focus chain Y [auth D] Interactions & Density Focus chain AA [auth E] Focus chain CA [auth F] Focus chain FA [auth G] Focus chain GA [auth G] Focus chain IA [auth H] Focus chain KA [auth I] Focus chain MA [auth J] Focus chain N [auth C] Focus chain NA [auth J] Focus chain P [auth A] Focus chain Q [auth A] Focus chain QA [auth K] Focus chain RA [auth K] Focus chain S [auth B] Focus chain T [auth B] Focus chain TA [auth L] Focus chain U [auth B] Focus chain W [auth D] Focus chain X [auth D] Focus chain Y [auth D]