5WTS | pdb_00005wts

Green fluorescent protein linked MTide-02 inhibitor in complex with mdm2

• PDB DOI: https://doi.org/10.2210/pdb5WTS/pdb

• Classification: FLUORESCENT PROTEIN/INHIBITOR
• Organism(s): Aequorea victoria, Camelus dromedarius, Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-12-14 Released: 2017-12-20 
• Deposition Author(s): Wongsantichon, J., Robinson, R.C., Ghadessy, F.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.244 (Depositor), 0.247 (DCC) 
• R-Value Work: 
  0.204 (Depositor), 0.205 (DCC) 
• R-Value Observed: 
  0.206 (Depositor) 

Literature

Green fluorescent protein linked peptide inhibitor PMI in complex with mdm2

Chee, S.M.Q., Wongsantichon, J., Sana, B., Robinson, R.C., Ghadessy, F.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 54.64 kDa 
• Atom Count: 3,603 
• Modeled Residue Count: 446 
• Deposited Residue Count: 480 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Green fluorescent protein linked MTide-02	A	358	Aequorea victoria, Camelus dromedarius This entity is chimeric	Mutation(s): 0  Gene Names: GFP

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase Mdm2	B	122	Homo sapiens	Mutation(s): 0  Gene Names: MDM2 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q00987 (Homo sapiens) Explore Q00987  Go to UniProtKB:  Q00987
PHAROS:  Q00987 GTEx:  ENSG00000135679

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PG4	E [auth B]	TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N
PO4	D [auth A], F [auth B]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CRO	A	L-PEPTIDE LINKING	C15 H17 N3 O5		THR, TYR, GLY

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.244 (Depositor), 0.247 (DCC) 
• R-Value Work:  0.204 (Depositor), 0.205 (DCC) 
• R-Value Observed: 0.206 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.766	α = 90
b = 98.422	β = 90
c = 218.988	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-12-20 
Deposition Author(s): Wongsantichon, J., Robinson, R.C., Ghadessy, F.J.

Revision History  

• Version 1.0: 2017-12-20
  Type: Initial release
  
• Version 1.1: 2018-09-12
  Changes: Data collection, Source and taxonomy
• Version 1.2: 2019-11-06
  Changes: Data collection, Structure summary
• Version 1.3: 2020-11-18
  Changes: Source and taxonomy
• Version 1.4: 2020-11-25
  Changes: Database references, Derived calculations, Source and taxonomy, Structure summary
• Version 1.5: 2024-10-23
  Changes: Data collection, Database references, Structure summary
• Version 2.0: 2026-03-18
  Changes: Polymer sequence