5WJW | pdb_00005wjw

Cryo-EM structure of B. subtilis flagellar filaments H84R


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 5WJW

This is version 1.3 of the entry. See complete history

Literature

A structural model of flagellar filament switching across multiple bacterial species.

Wang, F.Burrage, A.M.Postel, S.Clark, R.E.Orlova, A.Sundberg, E.J.Kearns, D.B.Egelman, E.H.

(2017) Nat Commun 8: 960-960

  • DOI: https://doi.org/10.1038/s41467-017-01075-5
  • Primary Citation Related Structures: 
    5WJT, 5WJU, 5WJV, 5WJW, 5WJX, 5WJY, 5WJZ, 5WK5, 5WK6

  • PubMed Abstract: 

    The bacterial flagellar filament has long been studied to understand how a polymer composed of a single protein can switch between different supercoiled states with high cooperativity. Here we present near-atomic resolution cryo-EM structures for flagellar filaments from both Gram-positive Bacillus subtilis and Gram-negative Pseudomonas aeruginosa. Seven mutant flagellar filaments in B. subtilis and two in P. aeruginosa capture two different states of the filament. These reliable atomic models of both states reveal conserved molecular interactions in the interior of the filament among B. subtilis, P. aeruginosa and Salmonella enterica. Using the detailed information about the molecular interactions in two filament states, we successfully predict point mutations that shift the equilibrium between those two states. Further, we observe the dimerization of P. aeruginosa outer domains without any perturbation of the conserved interior of the filament. Our results give new insights into how the flagellin sequence has been "tuned" over evolution.Bacterial flagellar filaments are composed almost entirely of a single protein-flagellin-which can switch between different supercoiled states in a highly cooperative manner. Here the authors present near-atomic resolution cryo-EM structures of nine flagellar filaments, and begin to shed light on the molecular basis of filament switching.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.

Macromolecule Content 

  • Total Structure Weight: 1,339.89 kDa 
  • Atom Count: 92,824 
  • Modeled Residue Count: 12,382 
  • Deposited Residue Count: 12,464 
  • Unique protein chains: 1

Macromolecules

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot
RECONSTRUCTIONSPIDER

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM122510
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM093030

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-25
    Type: Initial release
  • Version 1.1: 2017-11-01
    Changes: Database references
  • Version 1.2: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references