5W0Y | pdb_00005w0y

Solution NMR Structure of a Class I Hydrophobin from Serpula lacrymans


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Characterization of the structure and self-assembly of two distinct class IB hydrophobins.

Vergunst, K.L.Kenward, C.Langelaan, D.N.

(2022) Appl Microbiol Biotechnol 106: 7831-7843

  • DOI: https://doi.org/10.1007/s00253-022-12253-x
  • Primary Citation Related Structures: 
    5W0Y

  • PubMed Abstract: 

    Hydrophobins are small proteins secreted by fungi that accumulate at interfaces, modify surface hydrophobicity, and self-assemble into large amyloid-like structures. These unusual properties make hydrophobins an attractive target for commercial applications as emulsifiers and surface modifying agents. Hydrophobins have diverse sequences and tertiary structures, complicating attempts to characterize how they function. Here we describe the atomic resolution structure of the unusual hydrophobin SLH4 (86 aa, 8.4 kDa) and compare its function to another hydrophobin, SC16 (99 aa, 10.2 kDa). Despite containing only one charged residue, SLH4 has a similar structure to SC16 yet has strikingly different rodlet morphology, propensity to self-assemble, and preferred assembly conditions. Secondary structure analysis of both SC16 and SLH4 suggest that during rodlet formation residues in the first intercysteine loop undergo conformational changes. This work outlines a representative structure for class IB hydrophobins and illustrates how hydrophobin surface properties govern self-assembly, which provides context to rationally select hydrophobins for applications as surface modifiers. KEY POINTS: • The atomic-resolution structure of the hydrophobin SLH4 was determined using nuclear magnetic resonance spectroscopy. • The structure of SLH4 outlines a representative structure for class IB hydrophobins. • The assembly characteristics of SLH4 and SC16 are distinct, outlining how surface properties of hydrophobins influence their function.


  • Organizational Affiliation
    • Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, NS, Canada.

Macromolecule Content 

  • Total Structure Weight: 8.44 kDa 
  • Atom Count: 583 
  • Modeled Residue Count: 88 
  • Deposited Residue Count: 88 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Hydrophobin88Serpula lacrymans var. lacrymans S7.9Mutation(s): 0 
Gene Names: slh4SERLADRAFT_457525
UniProt
Find proteins for F8NJA2 (Serpula lacrymans var. lacrymans (strain S7.9))
Explore F8NJA2 
Go to UniProtKB:  F8NJA2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF8NJA2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2017-05338

Revision History  (Full details and data files)

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 1.1: 2020-01-08
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2023-06-14
    Changes: Database references, Other
  • Version 1.3: 2023-07-19
    Changes: Database references
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Structure summary