5VYF

Structure of single chain Fel d 1 bound to a neutralizing antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.227 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Treating cat allergy with monoclonal IgG antibodies that bind allergen and prevent IgE engagement.

Orengo, J.M.Radin, A.R.Kamat, V.Badithe, A.Ben, L.H.Bennett, B.L.Zhong, S.Birchard, D.Limnander, A.Rafique, A.Bautista, J.Kostic, A.Newell, D.Duan, X.Franklin, M.C.Olson, W.Huang, T.Gandhi, N.A.Lipsich, L.Stahl, N.Papadopoulos, N.J.Murphy, A.J.Yancopoulos, G.D.

(2018) Nat Commun 9: 1421-1421

  • DOI: https://doi.org/10.1038/s41467-018-03636-8
  • Primary Citation of Related Structures:  
    5VYF

  • PubMed Abstract: 

    Acute allergic symptoms are caused by allergen-induced crosslinking of allergen-specific immunoglobulin E (IgE) bound to Fc-epsilon receptors on effector cells. Desensitization with allergen-specific immunotherapy (SIT) has been used for over a century, but the dominant protective mechanism remains unclear. One consistent observation is increased allergen-specific IgG, thought to competitively block allergen binding to IgE. Here we show that the blocking potency of the IgG response to Cat-SIT is heterogeneous. Next, using two potent, pre-selected allergen-blocking monoclonal IgG antibodies against the immunodominant cat allergen Fel d 1, we demonstrate that increasing the IgG/IgE ratio reduces the allergic response in mice and in cat-allergic patients: a single dose of blocking IgG reduces clinical symptoms in response to nasal provocation (ANCOVA, p = 0.0003), with a magnitude observed at day 8 similar to that reported with years of conventional SIT. This study suggests that simply augmenting the blocking IgG/IgE ratio may reverse allergy.


  • Organizational Affiliation

    Regeneron Pharmaceuticals Inc., 777 Old Saw Mill River Road, Tarrytown, NY, 10591, USA. jamie.orengo@regeneron.com.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody light chainA [auth L],
D [auth A]
214Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Fab heavy chainB [auth H],
E [auth B]
220Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Chimera of Major allergen I polypeptide chain 2,Major allergen I polypeptide chain 1C [auth F],
F [auth C]
199Felis catusMutation(s): 2 
Gene Names: CH2CH1
Membrane Entity: Yes 
UniProt
Find proteins for P30438 (Felis catus)
Explore P30438 
Go to UniProtKB:  P30438
Find proteins for P30440 (Felis catus)
Explore P30440 
Go to UniProtKB:  P30440
Entity Groups  
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UniProt GroupsP30438P30440
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.227 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.985α = 90
b = 131.48β = 90
c = 148.357γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-04-04
    Type: Initial release
  • Version 1.1: 2018-12-05
    Changes: Data collection, Database references
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-09
    Changes: Structure summary