5VJY

Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.142 
  • R-Value Observed: 0.144 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri

Delker, S.L.Abendroth, J.Lorimer, D.Edwards, T.E.Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
dUTP pyrophosphatase
A, B, C, D, E
155Naegleria fowleriMutation(s): 0 
UniProt
Find proteins for A0A1Z0YU86 (Naegleria fowleri)
Explore A0A1Z0YU86 
Go to UniProtKB:  A0A1Z0YU86
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1Z0YU86
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.142 
  • R-Value Observed: 0.144 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 118.64α = 90
b = 118.64β = 90
c = 98.98γ = 120
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
MoRDaphasing
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-05-03
    Type: Initial release
  • Version 1.1: 2017-05-24
    Changes: Database references
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Refinement description