5V5I | pdb_00005v5i

OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.1

• PDB DOI: https://doi.org/10.2210/pdb5V5I/pdb

• Classification: hydrolase, transferase
• Organism(s): Crimean-Congo hemorrhagic fever virus strain IbAr10200, synthetic construct
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2017-03-14 Released: 2017-05-10 
• Deposition Author(s): Khare, B., Mark, B.L.
• Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada), Research Manitoba

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.273 (Depositor), 0.274 (DCC) 
• R-Value Work: 
  0.222 (Depositor), 0.225 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Literature

OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.1

Zhang, W., Bailey-Elkin, B.A., Knaap, R.C.M., Khare, B., Dalebout, T.J., Johnson, G.G., van Kasteren, P.B., McLeish, N.J., Gu, J., He, W., Kikkert, M., Mark, B.L., Sidhu, S.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 63.63 kDa 
• Atom Count: 3,884 
• Modeled Residue Count: 473 
• Deposited Residue Count: 558 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase L	A, C	174	Crimean-Congo hemorrhagic fever virus strain IbAr10200	Mutation(s): 0  EC: 3.4.19.12 (PDB Primary Data), 2.7.7.48 (PDB Primary Data), 3.4.22 (UniProt), 3.1 (UniProt)
UniProt
Find proteins for Q6TQR6 (Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970)) Explore Q6TQR6  Go to UniProtKB:  Q6TQR6

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin variant CC.1	B, D	105	synthetic construct	Mutation(s): 0

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSX	A, C	L-PEPTIDE LINKING	C3 H7 N O3 S		CYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.273 (Depositor), 0.274 (DCC) 
• R-Value Work:  0.222 (Depositor), 0.225 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.167	α = 90
b = 83.222	β = 90
c = 150.886	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-05-10 
Deposition Author(s): Khare, B., Mark, B.L.

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Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	RGPIN-2015-05310
Research Manitoba	Canada	--

Revision History  

• Version 1.0: 2017-05-10
  Type: Initial release
  
• Version 1.1: 2017-06-07
  Changes: Database references
• Version 1.2: 2017-09-20
  Changes: Author supporting evidence
• Version 1.3: 2018-02-21
  Changes: Database references
• Version 1.4: 2020-01-08
  Changes: Author supporting evidence
• Version 1.5: 2025-04-02
  Changes: Data collection, Database references, Structure summary