5V0Y | pdb_00005v0y

Solution structure of arenicin-3.

PDB DOI: https://doi.org/10.2210/pdb5V0Y/pdb
BMRB: 30259

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Arenicola marina
Mutation(s): No

Deposited: 2017-02-28 Released: 2018-08-08
Deposition Author(s): Edwards, I.A., Mobli, M.
Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 5V0Y

This is version 1.4 of the entry. See complete history.

Literature

An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria

Elliott, A., Huang, J., Neve, S., Zuegg, J., Edwards, I., Cain, A., Boinett, C., Barquist, L., Lundberg, C., Steen, J., Butler, M., Mobli, M., Porter, K., Blaskovich, M., Lociuro, S., Strandh, M., Cooper, M.

(2020) Nat Commun

Macromolecule Content

Total Structure Weight: 2.62 kDa
Atom Count: 181
Modeled Residue Count: 21
Deposited Residue Count: 21
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
arenicin-3	A	21	Arenicola marina	Mutation(s): 0
UniProt
Find proteins for A0A3F2YLM5 (Arenicola marina) Explore A0A3F2YLM5 Go to UniProtKB: A0A3F2YLM5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A3F2YLM5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-08-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Health and Medical Research Council (NHMRC, Australia)	Australia	APP1106590

Revision History (Full details and data files)

Version 1.0: 2018-08-08
Type: Initial release
Version 1.1: 2019-02-20
Changes: Author supporting evidence, Data collection
Version 1.2: 2020-01-08
Changes: Author supporting evidence, Data collection
Version 1.3: 2020-06-10
Changes: Database references
Version 1.4: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.