5U50 | pdb_00005u50

Crystal structure of citrus MAF1 in space group C 2 2 21

PDB DOI: https://doi.org/10.2210/pdb5U50/pdb

Classification: TRANSCRIPTION
Organism(s): Citrus sinensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-06 Released: 2017-07-19
Deposition Author(s): Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.260 (Depositor), 0.266 (DCC)
R-Value Work:
0.222 (Depositor), 0.231 (DCC)
R-Value Observed:
0.224 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5U50

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of citrus MAF1 in space group C 2 2 21

Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 122.71 kDa
Atom Count: 5,690
Modeled Residue Count: 680
Deposited Residue Count: 1,060
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Repressor of RNA polymerase III transcription	A, B, C, D	265	Citrus sinensis	Mutation(s): 0 Gene Names: MAF1
UniProt
Find proteins for G9I821 (Citrus sinensis) Explore G9I821 Go to UniProtKB: G9I821
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G9I821
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.260 (Depositor), 0.266 (DCC)
R-Value Work: 0.222 (Depositor), 0.231 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 140.165	α = 90
b = 228.406	β = 90
c = 85.89	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-07-19

Deposition Author(s):

Nascimento, A.F.Z.

Benedetti, C.E.

Revision History (Full details and data files)

Version 1.0: 2017-07-19
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.