5THW

Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia multivorans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.156 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia multivorans

Abendroth, J.Delker, S.L.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Deacylase
A, B, C, D
434Burkholderia multivorans ATCC 17616Mutation(s): 0 
Gene Names: BMULJ_06149
EC: 3.5.1.87
UniProt
Find proteins for A0A0H3KRF1 (Burkholderia multivorans (strain ATCC 17616 / 249))
Explore A0A0H3KRF1 
Go to UniProtKB:  A0A0H3KRF1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3KRF1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
URP
Query on URP

Download Ideal Coordinates CCD File 
G [auth A],
L [auth C]
N-(AMINOCARBONYL)-BETA-ALANINE
C4 H8 N2 O3
JSJWCHRYRHKBBW-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
E [auth A]
F [auth A]
H [auth B]
J [auth C]
K [auth C]
E [auth A],
F [auth A],
H [auth B],
J [auth C],
K [auth C],
M [auth D]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
I [auth B],
N [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.46α = 90
b = 88.51β = 90.21
c = 126.44γ = 90
Software Package:
Software NamePurpose
XDSdata scaling
XSCALEdata scaling
MOLREPphasing
Cootmodel building
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-09
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Derived calculations, Refinement description
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary