5TGJ | pdb_00005tgj

Structure of the SNX5 PX domain in complex with chlamydial protein IncE in space group I2

• PDB DOI: https://doi.org/10.2210/pdb5TGJ/pdb

• Classification: PROTEIN TRANSPORT
• Organism(s): Homo sapiens, Chlamydia trachomatis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-09-28 Released: 2017-10-11 
• Deposition Author(s): Collins, B., Paul, B.
• Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia), Australian Research Council (ARC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.243 (Depositor), 0.243 (DCC) 
• R-Value Work: 
  0.199 (Depositor), 0.204 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Literature

Structure of the SNX5 PX domain in complex with chlamydial protein IncE

Collins, B., Paul, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 39.56 kDa 
• Atom Count: 2,686 
• Modeled Residue Count: 326 
• Deposited Residue Count: 350 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sorting nexin-5	A, C	153	Homo sapiens	Mutation(s): 0  Gene Names: SNX5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y5X3 (Homo sapiens) Explore Q9Y5X3  Go to UniProtKB:  Q9Y5X3
PHAROS:  Q9Y5X3 GTEx:  ENSG00000089006

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
IncE	B, D	22	Chlamydia trachomatis	Mutation(s): 0  Gene Names: incE
UniProt
Find proteins for B7SCI5 (Chlamydia trachomatis) Explore B7SCI5  Go to UniProtKB:  B7SCI5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.243 (Depositor), 0.243 (DCC) 
• R-Value Work:  0.199 (Depositor), 0.204 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.44	α = 90
b = 80.32	β = 97.94
c = 94.722	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
iMOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-10-11 
Deposition Author(s): Collins, B., Paul, B.

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Funding Organization	Location	Grant Number
National Health and Medical Research Council (NHMRC, Australia)	Australia	APP1061574
National Health and Medical Research Council (NHMRC, Australia)	Australia	APP1058734
Australian Research Council (ARC)	Australia	DP150100364

Revision History  

• Version 1.0: 2017-10-11
  Type: Initial release
  
• Version 1.1: 2018-01-17
  Changes: Author supporting evidence
• Version 1.2: 2020-01-01
  Changes: Author supporting evidence
• Version 1.3: 2024-10-23
  Changes: Data collection, Database references, Structure summary