5SUM | pdb_00005sum

Ribosome assembly factor NSA1

PDB DOI: https://doi.org/10.2210/pdb5SUM/pdb

Classification: RIBOSOMAL PROTEIN
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-08-03 Released: 2017-04-26
Deposition Author(s): Lo, Y.H., Stanley, R.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.252 (Depositor), 0.253 (DCC)
R-Value Work:
0.204 (Depositor), 0.211 (DCC)
R-Value Observed:
0.207 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 5SUM

This is version 1.1 of the entry. See complete history.

Literature

Ribosome assembly factor

Lo, Y.H., Stanley, R.E.

To be published.

Macromolecule Content

Total Structure Weight: 104.77 kDa
Atom Count: 6,165
Modeled Residue Count: 782
Deposited Residue Count: 936
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein NSA1	A, B	468	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: NSA1, YGL111W, G2990
UniProt
Find proteins for P53136 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53136 Go to UniProtKB: P53136
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53136
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.252 (Depositor), 0.253 (DCC)
R-Value Work: 0.204 (Depositor), 0.211 (DCC)
R-Value Observed: 0.207 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 163.086	α = 90
b = 163.086	β = 90
c = 163.086	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PHASER	phasing
DM	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-04-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-04-26
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.