5RXN | pdb_00005rxn

COMBINED CRYSTALLOGRAPHIC REFINEMENT AND ENERGY MINIMIZATION OF RUBREDOXIN AT 1.2 ANGSTROM RESOLUTION

PDB DOI: https://doi.org/10.2210/pdb5RXN/pdb
Entry: 5RXN supersedes: 2RXN

Classification: ELECTRON TRANSFER(IRON-SULFUR PROTEIN)
Organism(s): Clostridium pasteurianum
Mutation(s): No

Deposited: 1984-10-15 Released: 1985-04-01
Deposition Author(s): Watenpaugh, K.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Work:
0.141 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 5RXN

This is version 1.3 of the entry. See complete history.

Literature

Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution

Watenpaugh, K.D.

To be published.

Macromolecule Content

Total Structure Weight: 6.11 kDa
Atom Count: 525
Modeled Residue Count: 54
Deposited Residue Count: 54
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RUBREDOXIN	A	54	Clostridium pasteurianum	Mutation(s): 0
UniProt
Find proteins for P00268 (Clostridium pasteurianum) Explore P00268 Go to UniProtKB: P00268
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00268
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Work: 0.141 (DCC)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.29	α = 90
b = 64.29	β = 90
c = 32.49	γ = 120

Software Package:

Software Name	Purpose
COMPUTER	refinement

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 1985-04-01

Deposition Author(s):

Watenpaugh, K.D.

This entry supersedes: 2RXN

Revision History (Full details and data files)

Version 1.0: 1985-04-01
Type: Initial release
Version 1.1: 2008-03-25
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-03-06
Changes: Data collection, Database references, Derived calculations, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.