PanDDA analysis group deposition of Human JMJD1B screened against the DSPL Fragment Library
Snee, M., Nowak, R., Johansson, C., Burgess-Brown, N.A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Oppermann, U.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific demethylase 3B | 372 | Homo sapiens | Mutation(s): 0 Gene Names: KDM3B, C5orf7, JHDM2B, JMJD1B, KIAA1082 EC: 1.14.11 (PDB Primary Data), 1.14.11.65 (UniProt) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q7LBC6 (Homo sapiens) Explore Q7LBC6 Go to UniProtKB: Q7LBC6 | |||||
PHAROS: Q7LBC6 GTEx: ENSG00000120733 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7LBC6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
S4D (Subject of Investigation/LOI) Query on S4D | C [auth A] | (1R,3S)-N-[(2H-1,3-benzodioxol-5-yl)methyl]-3-methylcyclopentan-1-amine C14 H19 N O2 XIPYONXASDNYLO-UHFFFAOYSA-N | |||
MN Query on MN | H [auth A], J [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A], E [auth A], F [auth A], G [auth A], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.89 | α = 90 |
b = 93.77 | β = 107.94 |
c = 93.77 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
REFMAC | phasing |